Major chimpanzee-specific structural changes in sperm development-associated genes

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dc.contributor.authorRyong Nam Kim-
dc.contributor.authorD W Kim-
dc.contributor.authorSang-Haeng Choi-
dc.contributor.authorS H Chae-
dc.contributor.authorSeong-Hyeuk Nam-
dc.contributor.authorDong-Wook Kim-
dc.contributor.authorAe-Ri Kim-
dc.contributor.authorAram Kang-
dc.contributor.authorKun Hyang Park-
dc.contributor.authorY S Lee-
dc.contributor.authorM Hirai-
dc.contributor.authorY Suzuki-
dc.contributor.authorS Sugano-
dc.contributor.authorK Hashimoto-
dc.contributor.authorDae Soo Kim-
dc.contributor.authorHong-Seog Park-
dc.date.accessioned2017-04-19T09:25:32Z-
dc.date.available2017-04-19T09:25:32Z-
dc.date.issued2011-
dc.identifier.issn1438-793X-
dc.identifier.uri10.1007/s10142-011-0220-9ko
dc.identifier.urihttps://oak.kribb.re.kr/handle/201005/10358-
dc.description.abstractA comprehensive analysis of transcriptional structures of chimpanzee sperm development-associated genes is of significant interest for deeply understanding sperm development and male reproductive process. In this study, we sequenced 7,680 clones from a chimpanzee testis full-length cDNA library and obtained 1,933 nonredundant high-quality full-length cDNA sequences. Comparative analysis between human and chimpanzee showed that 78 sperm developmentassociated genes, most of which were yet uncharacterized, had undergone severe structural changes (mutations at the start/stop codons, INDELs, alternative splicing variations and fusion forms) on genomic and transcript levels throughout chimpanzee evolution. Specifically, among the 78 sperm development-associated genes, 39 including ODF2, UBC, and CD59 showed markedly chimpanzee-specific structural changes. Through dN/dS analysis, we found that 56 transcripts (including seven sperm development-associated genes) had values of greater than one when comparing human and chimpanzee DNA sequences, whereas the values were less than one when comparing humans and orangutans. Gene ontology annotation and expression profiling showed that the chimpanzee testis transcriptome was enriched with genes that are associated with chimpanzee male germ cell development. Taken together, our study provides the first comprehensive molecular evidence that many chimpanzee sperm development-associated genes had experienced severe structural changes over the course of evolution on genomic and transcript levels.-
dc.publisherSpringer-
dc.titleMajor chimpanzee-specific structural changes in sperm development-associated genes-
dc.title.alternativeMajor chimpanzee-specific structural changes in sperm development-associated genes-
dc.typeArticle-
dc.citation.titleFunctional & Integrative Genomics-
dc.citation.number3-
dc.citation.endPage517-
dc.citation.startPage507-
dc.citation.volume11-
dc.contributor.affiliatedAuthorRyong Nam Kim-
dc.contributor.affiliatedAuthorSang-Haeng Choi-
dc.contributor.affiliatedAuthorSeong-Hyeuk Nam-
dc.contributor.affiliatedAuthorDong-Wook Kim-
dc.contributor.affiliatedAuthorAe-Ri Kim-
dc.contributor.affiliatedAuthorAram Kang-
dc.contributor.affiliatedAuthorKun Hyang Park-
dc.contributor.affiliatedAuthorDae Soo Kim-
dc.contributor.affiliatedAuthorHong-Seog Park-
dc.contributor.alternativeName김룡남-
dc.contributor.alternativeName김대원-
dc.contributor.alternativeName최상행-
dc.contributor.alternativeName채성화-
dc.contributor.alternativeName남성혁-
dc.contributor.alternativeName김동욱-
dc.contributor.alternativeName김애리-
dc.contributor.alternativeName강아람-
dc.contributor.alternativeName박근향-
dc.contributor.alternativeName이용석-
dc.contributor.alternativeNameHirai-
dc.contributor.alternativeNameSuzuki-
dc.contributor.alternativeNameSugano-
dc.contributor.alternativeNameHashimoto-
dc.contributor.alternativeName김대수-
dc.contributor.alternativeName박홍석-
dc.identifier.bibliographicCitationFunctional & Integrative Genomics, vol. 11, no. 3, pp. 507-517-
dc.identifier.doi10.1007/s10142-011-0220-9-
dc.subject.keywordChimpanzee-
dc.subject.keywordGene ontology-
dc.subject.keywordSperm development-
dc.subject.keywordStructural changes-
dc.subject.keywordTestis-
dc.subject.localChimpanzee-
dc.subject.localGene ontology-
dc.subject.localgene ontology-
dc.subject.localGene Ontology-
dc.subject.localSperm development-
dc.subject.localStructural changes-
dc.subject.localTestis-
dc.subject.localtestis-
dc.subject.localTestes-
dc.description.journalClassY-
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Division of Bio Technology Innovation > Core Research Facility & Analysis Center > 1. Journal Articles
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