STAP refinement of the NMR database: a database of 2405 refined solution NMR structures = STAP NMR 구조개선 데이타베이스

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dc.contributor.authorJoshua Yang-
dc.contributor.authorJihan Kim-
dc.contributor.authorSang Ho Oh-
dc.contributor.authorGukjeong Han-
dc.contributor.authorSanghyuk Lee-
dc.contributor.authorJinhyuk Lee-
dc.date.accessioned2017-04-19T09:28:41Z-
dc.date.available2017-04-19T09:28:41Z-
dc.date.issued2012-
dc.identifier.issn0305-1048-
dc.identifier.uri10.1093/nar/gkr1021ko
dc.identifier.urihttps://oak.kribb.re.kr/handle/201005/10554-
dc.description.abstractAccording to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. We present a public database of 2405 refined NMR solution structures [statistical torsion angle potentials (STAP) refinement of the NMR database, http://psb.kobic.re.kr/STAP/refinement] from the Protein Data Bank (PDB). A simulated annealing protocol was employed to obtain refined structures with target potentials, including the newly developed STAP. The refined database was extensively analysed using various quality indicators from several assessment programs to determine the nuclear Overhauser effect (NOE) completeness, Ramachandran appearance, χ1-χ2 rotamer normality, various parameters for protein stability and other indicators. Most quality indicators are improved in our protocol mainly due to the inclusion of the newly developed knowledge-based potentials. This database can be used by the NMR structure community for further development of research and validation tools, structure-related studies and modelling in many fields of research.-
dc.publisherOxford Univ Press-
dc.titleSTAP refinement of the NMR database: a database of 2405 refined solution NMR structures = STAP NMR 구조개선 데이타베이스-
dc.title.alternativeSTAP refinement of the NMR database: a database of 2405 refined solution NMR structures-
dc.typeArticle-
dc.citation.titleNucleic Acids Research-
dc.citation.numberD-
dc.citation.endPageD530-
dc.citation.startPageD525-
dc.citation.volume40-
dc.contributor.affiliatedAuthorJoshua Yang-
dc.contributor.affiliatedAuthorJihan Kim-
dc.contributor.affiliatedAuthorSang Ho Oh-
dc.contributor.affiliatedAuthorGukjeong Han-
dc.contributor.affiliatedAuthorSanghyuk Lee-
dc.contributor.affiliatedAuthorJinhyuk Lee-
dc.contributor.alternativeName양성우-
dc.contributor.alternativeName김지한-
dc.contributor.alternativeName오상호-
dc.contributor.alternativeName한국정-
dc.contributor.alternativeName이상혁-
dc.contributor.alternativeName이진혁-
dc.identifier.bibliographicCitationNucleic Acids Research, vol. 40, no. D, pp. D525-D530-
dc.identifier.doi10.1093/nar/gkr1021-
dc.description.journalClassY-
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Division of Biomedical Research > Disease Target Structure Research Center > 1. Journal Articles
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