DC Field | Value | Language |
---|---|---|
dc.contributor.author | H Ghang | - |
dc.contributor.author | Y Han | - |
dc.contributor.author | S Jeong | - |
dc.contributor.author | J Bhak | - |
dc.contributor.author | S Lee | - |
dc.contributor.author | T H Kim | - |
dc.contributor.author | C Kim | - |
dc.contributor.author | S Kim | - |
dc.contributor.author | F Al-Mulla | - |
dc.contributor.author | C H Youn | - |
dc.contributor.author | Hyang Sook Yoo | - |
dc.contributor.author | HUGO Pan-Asian SNP Consortium | - |
dc.date.accessioned | 2017-04-19T09:57:51Z | - |
dc.date.available | 2017-04-19T09:57:51Z | - |
dc.date.issued | 2011 | - |
dc.identifier.issn | I000-0158 | - |
dc.identifier.uri | 10.5808/GI.2011.9.4.181 | ko |
dc.identifier.uri | https://oak.kribb.re.kr/handle/201005/12251 | - |
dc.description.abstract | In planning a model-based phylogenic study for highly related ethnic data, the SNP marker number is an important factor to determine for relationship inferences. Genotype frequency data, utilizing a sub sampling method, from 63 Pan Asian ethnic groups was used for determining the minimum SNP number required to establish such relationships. Bootstrap random sub-samplings were done from 5.6K PASNPi SNP data. DA distance was calculated and neighbour-joining trees were drawn with every re-sampling data set. Consensus trees were made with the same 100 sub-samples and bootstrap proportions were calculated. The tree consistency to the one obtained from the whole marker set, improved with increasing marker numbers. The bootstrap proportions became reliable when more than 7,000 SNPs were used at a time. Within highly related ethnic groups, the minimum SNPs number for a robust neighbor-joining tree inference was about 7,000 for a 95% bootstrap support. | - |
dc.publisher | Korea Soc-Assoc-Inst | - |
dc.title | How many SNPs should be used for the human phylogeny of highly related ethnicities? : a case of pan Asian 63 ethnicities | - |
dc.title.alternative | How many SNPs should be used for the human phylogeny of highly related ethnicities? : a case of pan Asian 63 ethnicities | - |
dc.type | Article | - |
dc.citation.title | Genomics & Informatics | - |
dc.citation.number | 4 | - |
dc.citation.endPage | 188 | - |
dc.citation.startPage | 181 | - |
dc.citation.volume | 9 | - |
dc.contributor.affiliatedAuthor | Hyang Sook Yoo | - |
dc.contributor.alternativeName | 강호영 | - |
dc.contributor.alternativeName | 한영주 | - |
dc.contributor.alternativeName | 정상진 | - |
dc.contributor.alternativeName | 박종화 | - |
dc.contributor.alternativeName | 이성훈 | - |
dc.contributor.alternativeName | 김태형 | - |
dc.contributor.alternativeName | 김철홍 | - |
dc.contributor.alternativeName | 김상수 | - |
dc.contributor.alternativeName | Al-Mulla | - |
dc.contributor.alternativeName | 윤찬현 | - |
dc.contributor.alternativeName | 유향숙 | - |
dc.contributor.alternativeName | HUGO Pan-Asian | - |
dc.identifier.bibliographicCitation | Genomics & Informatics, vol. 9, no. 4, pp. 181-188 | - |
dc.identifier.doi | 10.5808/GI.2011.9.4.181 | - |
dc.subject.keyword | neighbour-joining | - |
dc.subject.keyword | phylogeny | - |
dc.subject.keyword | minimum SNP | - |
dc.subject.keyword | ethnic group | - |
dc.subject.local | neighbour-joining | - |
dc.subject.local | phylogeny | - |
dc.subject.local | Phylogeny | - |
dc.subject.local | minimum SNP | - |
dc.subject.local | ethnic groups | - |
dc.subject.local | ethnic group | - |
dc.description.journalClass | N | - |
There are no files associated with this item.
Items in OpenAccess@KRIBB are protected by copyright, with all rights reserved, unless otherwise indicated.