miRseqViewer : multi-panel visualization of sequence, structure and expression for analysis of microRNA sequencing data = miRseqViewer: microRNA 서열데이터 분석을 위한 서열, 구조 및 발현정보 가시화 도구

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dc.contributor.authorInsu Jang-
dc.contributor.authorH Chang-
dc.contributor.authorY Jun-
dc.contributor.authorSeongjin Park-
dc.contributor.authorJin Ok Yang-
dc.contributor.authorByungwook Lee-
dc.contributor.authorW Kim-
dc.contributor.authorV N Kim-
dc.contributor.authorS Lee-
dc.date.accessioned2017-04-19T10:03:14Z-
dc.date.available2017-04-19T10:03:14Z-
dc.date.issued2015-
dc.identifier.issn1367-4803-
dc.identifier.uri10.1093/bioinformatics/btu676ko
dc.identifier.urihttps://oak.kribb.re.kr/handle/201005/12573-
dc.description.abstractDeep sequencing of small RNAs has become a routine process in recent years, but no dedicated viewer is as yet available to explore the sequence features simultaneously along with secondary structure and gene expression of microRNA (miRNA). We present a highly interactive application that visualizes the sequence alignment, secondary structure and normalized read counts in synchronousmultipanel windows. This helps users to easily examine the relationships between the structure of precursor and the sequences and abundance of final products and thereby will facilitate the studies on miRNA biogenesis and regulation. The project manager handles multiple samples of multiple groups. The read alignment is imported in BAM file format. Implemented features comprise sorting, zooming, highlighting, editing, filtering, saving, exporting, etc. Currently, miRseqViewer supports 84 organisms whose annotation is available at miRBase.-
dc.publisherOxford Univ Press-
dc.titlemiRseqViewer : multi-panel visualization of sequence, structure and expression for analysis of microRNA sequencing data = miRseqViewer: microRNA 서열데이터 분석을 위한 서열, 구조 및 발현정보 가시화 도구-
dc.title.alternativemiRseqViewer : multi-panel visualization of sequence, structure and expression for analysis of microRNA sequencing data-
dc.typeArticle-
dc.citation.titleBioinformatics-
dc.citation.number4-
dc.citation.endPage598-
dc.citation.startPage596-
dc.citation.volume31-
dc.contributor.affiliatedAuthorInsu Jang-
dc.contributor.affiliatedAuthorSeongjin Park-
dc.contributor.affiliatedAuthorJin Ok Yang-
dc.contributor.affiliatedAuthorByungwook Lee-
dc.contributor.alternativeName장인수-
dc.contributor.alternativeName장혜식-
dc.contributor.alternativeName전유경-
dc.contributor.alternativeName박성진-
dc.contributor.alternativeName양진옥-
dc.contributor.alternativeName이병욱-
dc.contributor.alternativeName김완규-
dc.contributor.alternativeName김빛내리-
dc.contributor.alternativeName이상혁-
dc.identifier.bibliographicCitationBioinformatics, vol. 31, no. 4, pp. 596-598-
dc.identifier.doi10.1093/bioinformatics/btu676-
dc.description.journalClassY-
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