Nucleotide sequence and genome organization of atractylodes mottle virus, a new member of the genus Carlavirus

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Title
Nucleotide sequence and genome organization of atractylodes mottle virus, a new member of the genus Carlavirus
Author(s)
F Zhao; D Igori; Seungmo Lim; Ran Hee Yoo; S H Lee; Jae Sun Moon
Bibliographic Citation
Archives of Virology, vol. 160, no. 11, pp. 2895-2898
Publication Year
2015
Abstract
The complete genome sequence of a member of a distinct species of the genus Carlavirus in the family Betaflexiviridae, tentatively named atractylodes mottle virus (AtrMoV), has been determined. Analysis of its genomic organization indicates that it has a single-stranded, positive-sense genomic RNA of 8866 nucleotides, excluding the poly(A) tail, and consists of six open reading frames typical of members of the genus Carlavirus. The individual open reading frames of AtrMoV show moderately low sequence similarity to those of other carlaviruses at the nucleotide and amino acid sequence levels. Pairwise comparison and phylogenetic analysis suggest that AtrMoV is most closely related to chrysanthemum virus B.
ISSN
0304-8608
Publisher
Springer
DOI
http://dx.doi.org/10.1007/s00705-015-2553-5
Type
Article
Appears in Collections:
Division of Biomaterials Research > Plant Systems Engineering Research > 1. Journal Articles
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