Exploring the sound-modulated delay in tomato ripening through expression analysis of coding and non-coding RNAs

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dc.contributor.authorJ Y Kim-
dc.contributor.authorSeon-Kyu Kim-
dc.contributor.authorJihye Jung-
dc.contributor.authorM J Jeong-
dc.contributor.authorChoong-Min Ryu-
dc.date.accessioned2019-01-23T16:31:15Z-
dc.date.available2019-01-23T16:31:15Z-
dc.date.issued2018-
dc.identifier.issn0305-7364-
dc.identifier.uri10.1093/aob/mcy134ko
dc.identifier.urihttps://oak.kribb.re.kr/handle/201005/18304-
dc.description.abstractBackground and Aims: Sound is omnipresent in nature. Recent evidence supports the notion that naturally occurring and artificially generated sound waves induce inter- and intracellular changes in plants. These changes, in turn, lead to diverse physiological changes, such as enhanced biotic and abiotic stress responses, in both crops and model plants. Methods: We previously observed delayed ripening in tomato fruits exposed to 1 kHz sound vibrations for 6 h. Here, we evaluated the molecular mechanism underlying this delaying fruit ripening by performing RNA-sequencing analysis of tomato fruits at 6 h, 2 d, 5 d and 7 d after 1 kHz sound vibration treatment. Key Results: Bioinformatic analysis of differentially expressed genes and non-coding small RNAs revealed that some of these genes are involved in plant hormone and cell wall modification processes. Ethylene and cytokinin biosynthesis and signalling-related genes were downregulated by sound vibration treatment, whereas genes involved in flavonoid, phenylpropanoid and glucan biosynthesis were upregulated. Furthermore, we identified two sound-specific microRNAs and validated the expression of the pre-microRNAs and the mRNAs of their target genes. Conclusions: Our results indicate that sound vibration helps to delay fruit ripening through the sophisticated regulation of coding and non-coding RNAs and transcription factor genes.-
dc.publisherOxford Univ Press-
dc.titleExploring the sound-modulated delay in tomato ripening through expression analysis of coding and non-coding RNAs-
dc.title.alternativeExploring the sound-modulated delay in tomato ripening through expression analysis of coding and non-coding RNAs-
dc.typeArticle-
dc.citation.titleAnnals of Botany-
dc.citation.number0-
dc.citation.endPage1244-
dc.citation.startPage1231-
dc.citation.volume122-
dc.contributor.affiliatedAuthorSeon-Kyu Kim-
dc.contributor.affiliatedAuthorJihye Jung-
dc.contributor.affiliatedAuthorChoong-Min Ryu-
dc.contributor.alternativeName김주열-
dc.contributor.alternativeName김선규-
dc.contributor.alternativeName정지혜-
dc.contributor.alternativeName정미정-
dc.contributor.alternativeName류충민-
dc.identifier.bibliographicCitationAnnals of Botany, vol. 122, pp. 1231-1244-
dc.identifier.doi10.1093/aob/mcy134-
dc.subject.keywordTomato-
dc.subject.keywordSound vibration-
dc.subject.keywordRipening-
dc.subject.keywordEthylene-
dc.subject.keywordmiRNA-
dc.subject.keywordTranscriptome-
dc.subject.localTomato-
dc.subject.localtomato-
dc.subject.localsound vibration-
dc.subject.localSound vibration-
dc.subject.localripening-
dc.subject.localRipening-
dc.subject.localEthylene-
dc.subject.localethylene-
dc.subject.localmiRNA-
dc.subject.localMicroRNA-
dc.subject.localMicroRNA (miRNA)-
dc.subject.localTranscriptome-
dc.subject.localTranscriptomes-
dc.subject.localtranscriptome-
dc.description.journalClassY-
Appears in Collections:
Aging Convergence Research Center > 1. Journal Articles
Division of Research on National Challenges > Infectious Disease Research Center > 1. Journal Articles
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