Plastome comparison and evolution within the tribes of Plantaginaceae: insights from an Asian gypsyweed

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dc.contributor.authorS Maurya-
dc.contributor.authorA M Darshetkar-
dc.contributor.authorDong Keun Yi-
dc.contributor.authorJ Kim-
dc.contributor.authorChangyoung Lee-
dc.contributor.authorM A Ali-
dc.contributor.authorSangho Choi-
dc.contributor.authorR K Choudhary-
dc.contributor.authorSoo Yong Kim-
dc.date.accessioned2020-12-07T08:21:25Z-
dc.date.available2020-12-07T08:21:25Z-
dc.date.issued2020-
dc.identifier.issn1319-562X-
dc.identifier.urihttps://oak.kribb.re.kr/handle/201005/23902-
dc.description.abstractIn spite of availability of several plastomes representing different tribes of Plantaginaceae, sparse attempts have been made to understand the plastome structure, evolution, and phylogenomics. In the present study, we have made an effort to understand the gene content and plastome evolution in the family Plantaginaceae using the newly generated plastome sequence of Veronica ovata subsp. kiusiana, a taxon native to SE Asia. In the first-ever attempt, plastomes of seven out of 10 tribes of Plantaginaceae have been compared to understand the evolution across the tribes of Plantaginaceae. The size of the plastome of V. ovata subsp. kiusiana is 152,249 bp, showing a typical quadripartite structure containing LSC, SSC, and two IRs with the sizes of 83,187, 17,704, and 25,679 respectively. The plastome comparison revealed the unique deletions in ycf2 and ndhF genes of members of different tribes, and also revealed high nucleotide variable hotspots. The study also revealed six highly variable genes and intergenic spacer viz. rps16, rps15-ycf1, ccsA-ndhD, ndhC-trnV, petN-psbM, and ycf1-trnN as potential DNA barcodes for the genus Veronica. The phylogenomic study revealed the sister relationship between V. ovata subsp. kiusiana and V. persica and also suggested the tentative placement of seven tribes in the family Plantaginaceae.-
dc.publisherElsevier-
dc.titlePlastome comparison and evolution within the tribes of Plantaginaceae: insights from an Asian gypsyweed-
dc.title.alternativePlastome comparison and evolution within the tribes of Plantaginaceae: insights from an Asian gypsyweed-
dc.typeArticle-
dc.citation.titleSaudi Journal of Biological Sciences-
dc.citation.number12-
dc.citation.endPage3498-
dc.citation.startPage3489-
dc.citation.volume27-
dc.contributor.affiliatedAuthorDong Keun Yi-
dc.contributor.affiliatedAuthorChangyoung Lee-
dc.contributor.affiliatedAuthorSangho Choi-
dc.contributor.affiliatedAuthorSoo Yong Kim-
dc.contributor.alternativeNameMaurya-
dc.contributor.alternativeNameDarshetkar-
dc.contributor.alternativeName이동근-
dc.contributor.alternativeName김진기-
dc.contributor.alternativeName이창영-
dc.contributor.alternativeNameAli-
dc.contributor.alternativeName최상호-
dc.contributor.alternativeNameChoudhary-
dc.contributor.alternativeName김수용-
dc.identifier.bibliographicCitationSaudi Journal of Biological Sciences, vol. 27, no. 12, pp. 3489-3498-
dc.identifier.doi10.1016/j.sjbs.2020.09.040-
dc.subject.keywordAntirrhinum majus-
dc.subject.keywordNucleotide diversity-
dc.subject.keywordPhylogenomics-
dc.subject.keywordPlastome evolution-
dc.subject.keywordSSRs-
dc.subject.keywordVeronica ovata subsp. kiusiana-
dc.subject.localAntirrhinum majus-
dc.subject.localNucleotide diversity-
dc.subject.localPhylogenomics-
dc.subject.localPlastome evolution-
dc.subject.localSSRs-
dc.subject.localSSRs (simple sequence repeats)-
dc.subject.localVeronica ovata subsp. kiusiana-
dc.description.journalClassY-
Appears in Collections:
Ochang Branch Institute > Division of National Bio-Infrastructure > International Biological Material Research Center > 1. Journal Articles
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