Pedobacter endophyticus sp. nov., an endophytic bacterium isolated from Carex pumila

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dc.contributor.authorY Peng-
dc.contributor.authorL Jiang-
dc.contributor.authorJi Yoon Seo-
dc.contributor.authorZhun Li-
dc.contributor.authorHan Na Choe-
dc.contributor.authorJae Cheol Jeong-
dc.contributor.authorSuk Weon Kim-
dc.contributor.authorY M Kim-
dc.contributor.authorCha Young Kim-
dc.contributor.authorJiyoung Lee-
dc.date.accessioned2021-07-26T15:30:41Z-
dc.date.available2021-07-26T15:30:41Z-
dc.date.issued2021-
dc.identifier.issn1466-5026-
dc.identifier.urihttps://oak.kribb.re.kr/handle/201005/24523-
dc.description.abstractAn aerobic, Gram-stain-negative, weak-motile, short-rod-shaped bacterial strain, designated JBR3-12T, was isolated from halophyte Carex pumila plants, and its taxonomic position was investigated by using a polyphasic taxonomic approach. The strain produced a pink pigment on tryptic soy agar and grew optimally at 25 °C, pH 8 and in the presence of 3 % (w/v) NaCl. Results of phylogenetic analysis based on 16S rRNA gene sequences showed that strain JBR3-12T formed a lineage within the genus Pedobacter and was most closely related to Pedobacter sandarakinus DS-27T (98.0 %) and Pedobacter agri PB92T (97.6 %). The DNA G+C content of the genome was 41.3 mol%; the whole genome length was 5 426 070 bp. The major fatty acids of JBR3-12T were iso-C15 : 0, summed feature 3 (comprising C16 : 1 ω6c and/or C16 : 1 ω7c) and iso-C17 : 0 3-OH. The predominant polar lipid was phosphatidylethanolamine. The predominant quinone was menaquinone-7. Based on its phenotypic, phylogenetic and genotypic features, strain JBR3-12T is proposed to represent a novel species of the genus Pedobacter, for which the name is Pedobacter endophyticus sp. nov. The type strain is JBR3-12T (=KCTC 82363T=NBRC 114901T).-
dc.publisherMicrobiology Soc-
dc.titlePedobacter endophyticus sp. nov., an endophytic bacterium isolated from Carex pumila-
dc.title.alternativePedobacter endophyticus sp. nov., an endophytic bacterium isolated from Carex pumila-
dc.typeArticle-
dc.citation.titleInternational Journal of Systematic and Evolutionary Microbiology-
dc.citation.number7-
dc.citation.endPage004915-
dc.citation.startPage004915-
dc.citation.volume71-
dc.contributor.affiliatedAuthorJi Yoon Seo-
dc.contributor.affiliatedAuthorZhun Li-
dc.contributor.affiliatedAuthorHan Na Choe-
dc.contributor.affiliatedAuthorJae Cheol Jeong-
dc.contributor.affiliatedAuthorSuk Weon Kim-
dc.contributor.affiliatedAuthorCha Young Kim-
dc.contributor.affiliatedAuthorJiyoung Lee-
dc.contributor.alternativeNamePeng-
dc.contributor.alternativeNameJiang-
dc.contributor.alternativeName서지윤-
dc.contributor.alternativeName이준-
dc.contributor.alternativeName최한나-
dc.contributor.alternativeName정재철-
dc.contributor.alternativeName김석원-
dc.contributor.alternativeName김영민-
dc.contributor.alternativeName김차영-
dc.contributor.alternativeName이지영-
dc.identifier.bibliographicCitationInternational Journal of Systematic and Evolutionary Microbiology, vol. 71, no. 7, pp. 004915-004915-
dc.identifier.doi10.1099/ijsem.0.004915-
dc.subject.keywordCarex pumila-
dc.subject.keywordNovel species-
dc.subject.keywordPedobacter endophyticus sp. nov.-
dc.subject.localCarex pumila-
dc.subject.localNovel species-
dc.subject.localnovel species-
dc.subject.localPedobacter endophyticus sp. nov.-
dc.description.journalClassY-
Appears in Collections:
Jeonbuk Branch Institute > Biological Resource Center > 1. Journal Articles
Jeonbuk Branch Institute > 1. Journal Articles
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