Comparative genomics and selection analysis of Yeonsan Ogye black chicken with whole-genome sequencing = 전장 유전체를 이용한 연산오계의 비교 유전체 분석

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dc.contributor.authorYoungbum Cho-
dc.contributor.authorJae-Yoon Kim-
dc.contributor.authorNamshin Kim-
dc.date.accessioned2022-02-16T15:30:25Z-
dc.date.available2022-02-16T15:30:25Z-
dc.date.issued2022-
dc.identifier.issn0888-7543-
dc.identifier.urihttps://oak.kribb.re.kr/handle/201005/25427-
dc.description.abstractYeonsan Ogye (OGYE; Gallus gallus domesticus) is a rare indigenous chicken breed that inhabits the Korean Peninsula. This breed has completely black coloring, including plumage, skin, eyes, beak, and internal organs. Despite these unique morphological characteristics, the population of OGYE has declined without in-depth research into their genome research. Therefore, this study aimed to compare the whole genome of OGYE to 12 other chicken populations, including ancestral breed, commercial breeds, Chinese indigenous breeds, and Korean native chickens. We focused on revealing the selection signature of OGYE, which has occurred through environmental pressures in the Korean Peninsula. Genome-wide selection analysis has identified local adaptation traits, such as egg development, that contribute to fetal viability and innate immune response to prevent viral and microbes infection in OGYE. In particular, SPP1 (Secreted Phosphoprotein 1), HSP90AA1 (Heat Shock Protein 90 Alpha Family Class A Member 1), and P2RX4 (Purinergic Receptor P2X 4) could have considerable involvement in egg development and RNASEL (Ribonuclease L), BRIP1 (BRCA1 Interacting Protein C-terminal Helicase 1), and TLR4 (Toll-Like Receptor 4) are crucial for the determination of the innate immune response. This study revealed the unique genetic diversity of OGYE at the genome-wide level. Furthermore, we emphasized the sustainable management of genetic resources and formulated breeding strategies for livestock on the Korean Peninsula.-
dc.publisherElsevier-
dc.titleComparative genomics and selection analysis of Yeonsan Ogye black chicken with whole-genome sequencing = 전장 유전체를 이용한 연산오계의 비교 유전체 분석-
dc.title.alternativeComparative genomics and selection analysis of Yeonsan Ogye black chicken with whole-genome sequencing-
dc.typeArticle-
dc.citation.titleGenomics-
dc.citation.number2-
dc.citation.endPage110298-
dc.citation.startPage110298-
dc.citation.volume114-
dc.contributor.affiliatedAuthorYoungbum Cho-
dc.contributor.affiliatedAuthorJae-Yoon Kim-
dc.contributor.affiliatedAuthorNamshin Kim-
dc.contributor.alternativeName조영범-
dc.contributor.alternativeName김재윤-
dc.contributor.alternativeName김남신-
dc.identifier.bibliographicCitationGenomics, vol. 114, no. 2, pp. 110298-110298-
dc.identifier.doi10.1016/j.ygeno.2022.110298-
dc.subject.keywordChicken-
dc.subject.keywordPopulation genetics-
dc.subject.keywordSelection signature-
dc.subject.keywordWhole-genome sequencing-
dc.subject.keywordGenomic characteristics-
dc.subject.keywordYeonsan Ogye-
dc.subject.localchicken-
dc.subject.localChicken-
dc.subject.localChickens-
dc.subject.localPopulation genetics-
dc.subject.localpopulation genetics-
dc.subject.localselection signature-
dc.subject.localSelection signature-
dc.subject.localwhole-genome sequencing-
dc.subject.localWhole genome sequencing-
dc.subject.localWhole genome sequencing (WGS)-
dc.subject.localWhole-genome sequencing-
dc.subject.localWhole genome sequence-
dc.subject.localgenomic characteristics-
dc.subject.localGenomic characteristics-
dc.subject.localYeonsan Ogye-
dc.description.journalClassY-
Appears in Collections:
Division of Biomedical Research > Personalized Genomic Medicine Research Center > 1. Journal Articles
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