PSIbase: a database of Protein Structural Interactome map (PSIMAP)

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Title
PSIbase: a database of Protein Structural Interactome map (PSIMAP)
Author(s)
S Gong; G Yoon; Insoo Jang; D Bolser; P Dafas; M Schroeder; H Choi; Y Cho; K Han; Sung Hoon Lee; H Choi; M Lappe; L Holm; Sangsoo Kim; D Oh; Jong Bhak
Bibliographic Citation
Bioinformatics, vol. 21, no. 10, pp. 2541-2543
Publication Year
2005
Abstract
Summary: Protein Structural Interactome map (PSIMAP) is a global interaction map that describes domain-domain and protein-protein interaction information for known Protein Data Bank structures. It calculates the Euclidean distance to determine interactions between possible pairs of structural domains in proteins. PSIbase is a database and file server for protein structural interaction information calculated by the PSIMAP algorithm. PSIbase also provides an easy-to-use protein domain assignment module, interaction navigation and visual tools. Users can retrieve possible interaction partners of their proteins of interests if a significant homology assignment is made with their query sequences.
ISSN
1367-4803
Publisher
Oxford Univ Press
DOI
http://dx.doi.org/10.1093/bioinformatics/bti366
Type
Article
Appears in Collections:
1. Journal Articles > Journal Articles
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