TO-GO: a Java-based Gene Ontology navigation environment

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Title
TO-GO: a Java-based Gene Ontology navigation environment
Author(s)
Ungsik Yu; Yoon Jeong Choi; Jung Kyoon Choi; S S Kim
Bibliographic Citation
Bioinformatics, vol. 21, no. 17, pp. 3580-3581
Publication Year
2005
Abstract
Summary: TO-GO is a Gene Ontology (GO) navigation tool, which is implemented as a Java application. After the initial data downloading, the GO term tree can be interactively navigated without further network transfer. Local annotation can be incorporated. It supports querying by GO terms or associated gene product information, displaying the result as a table or a sub-tree. The result from the search for a set of external database accessions includes the number of gene products associated with each node, inclusive of sub-nodes. Search results can be further processed by set operations and these set operations can be quite useful for expression profile data analysis. A copy/paste function is also implemented in order to facilitate data exchange between applications.
ISSN
1367-4803
Publisher
Oxford Univ Press
DOI
http://dx.doi.org/10.1093/bioinformatics/bti560
Type
Article
Appears in Collections:
1. Journal Articles > Journal Articles
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