CONSORF: a consensus prediction system for prokaryotic coding sequences

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Title
CONSORF: a consensus prediction system for prokaryotic coding sequences
Author(s)
Sung Soo Kang; Sung-Jin Yang; S Kim; Jong Bhak
Bibliographic Citation
Bioinformatics, vol. 23, no. 22, pp. 3088-3090
Publication Year
2007
Abstract
Summary: CONSORF is a fully automatic high-accuracy identification system that provides consensus prokaryotic CDS information. It first predicts the CDSs supported by consensus alignments. The alignments are derived from multiple genome-to-proteome comparisons with other prokaryotes using the FASTX program. Then, it fills the empty genomic regions with the CDSs supported by consensus ab initio predictions. From those consensus results, CONSORF provides prediction reliability scores, predicted frame-shifts, alternative start sites and best pair-wise match information against other prokaryotes.
ISSN
1367-4803
Publisher
Oxford Univ Press
DOI
http://dx.doi.org/10.1093/bioinformatics/btm512
Type
Article
Appears in Collections:
1. Journal Articles > Journal Articles
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