MassNet: a functional annotation service for protein mass spectrometry data

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Title
MassNet: a functional annotation service for protein mass spectrometry data
Author(s)
Dae Ui Park; Byung Chul Kim; Sung Woong Cho; Seongjin Park; J S Choi; S I Kim; Jong Bhak; Sung Hoon Lee
Bibliographic Citation
Nucleic Acids Research, vol. 36, no. Sup 2, pp. W491-W495
Publication Year
2008
Abstract
Although mass spectrometry has been frequently used to identify proteins, there are no web servers that provide comprehensive functional annotation of those identified proteins. It is necessary to provide such web service due to a rapid increase in the data. We, therefore, introduce MassNet, which provides (i) physico-chemical analysis information, (ii) KEGG pathway assignment (iii) Gene Ontology mapping and (iv) protein-protein interaction (PPI) prediction for the data from MASCOT, Prospector and Profound. MassNet provides the prediction information for PPIs using both 3D structural interaction and experimental interaction deposited in PSIMAP, BIND, DIP, HPRD, IntAct, MINT, CYGD and BioGrid.
ISSN
0305-1048
Publisher
Oxford Univ Press
DOI
http://dx.doi.org/10.1093/nar/gkn241
Type
Article
Appears in Collections:
1. Journal Articles > Journal Articles
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