A simple and fast web alignment tool for large amount of sequence data

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Title
A simple and fast web alignment tool for large amount of sequence data
Author(s)
Young Seok Lee; Jung Soo Oh
Bibliographic Citation
Genomics & Informatics, vol. 6, no. 3, pp. 157-159
Publication Year
2008
Abstract
Multiple sequence alignment (MSA) is the most important step for many of biological sequence analyses, homology search, and protein structural assignments. However, large amount of data make biologists difficult to perform MSA analyses and it requires much computational time to align many sequences. Here, we have developed a simple and fast web alignment tool for aligning, editing, and visualizing large amount of sequence data. We used a cluster server installed ClustalW-MPI using web services and message passing interface (MPI). It also enables users to edit multiple sequence alignments for manual editing and to download the input data and results such as alignments and phylogenetic tree.
Keyword
alignmentclustalW-MPIlarge dataJalviewparallel process
ISSN
I000-0158
Publisher
Korea Soc-Assoc-Inst
DOI
http://dx.doi.org/10.5808/GI.2008.6.3.157
Type
Article
Appears in Collections:
1. Journal Articles > Journal Articles
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